Spa typing of Staphylococcus aureus

*Genome sequence in FASTA format:

Load Example

Drop files here or click to upload

Please note that uploaded files must inFASTA format, and file suffixes only accept.fna, .fa, .fasta.

Upload DNA sequence file(s) in FASTA format to start the analysis

*alignment_tool:

*evalue:

Application Information

More Info

The spaTyper service predicts the Staphylococcus aureus spa type from genome sequences

Running time: <3min
Sample input: Staphylococcus_aureus_spa.fna
Example output: SAMPLE result

Reference

如果您在研究中使用了本工具，请在文章中引用下列文章:

TracePatho. 2025. TracePatho: All-in-one microbial analysis platform. Accessed July 9, 2025. https://tracepatho.com/.

Bartels MD, Petersen A, Worning P, et al. Comparing whole-genome sequencing with Sanger sequencing for spa typing of methicillin-resistant Staphylococcus aureus. J Clin Microbiol. 2014;52(12):4305-4308. doi:10.1128/JCM.01979-14

Harmsen D, Claus H, Witte W, et al. Typing of methicillin-resistant Staphylococcus aureus in a university hospital setting by using novel software for spa repeat determination and database management. J Clin Microbiol. 2003;41(12):5442-5448. doi:10.1128/JCM.41.12.5442-5448.2003