SARS-CoV-2 Lineage Designation

*Genome sequence in FASTA format:

Load Example

Drop files here or click to upload

Please note that uploaded files must inFASTA format, and file suffixes only accept.fna, .fa, .fasta.

Upload DNA sequence file(s) in FASTA format to start the analysis

*Minimum query length allowed for pangolin to attempt assignment:

*Maximum proportion of Ns allowed for pangolin to attempt assignment:

Application Information

More Info

Use Pangolin to designate the dynamic nomenclature of SARS-CoV-2 lineages

Running time: <3min
Sample input: SARS-CoV-2.fa
Example output: SAMPLE result

Reference

如果您在研究中使用了本工具，请在文章中引用下列文章:

TracePatho. 2025. TracePatho: All-in-one microbial analysis platform. Accessed July 9, 2025. https://tracepatho.com/.

Rambaut A, Holmes EC, O'Toole Á, et al. A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology. Nat Microbiol. 2020;5(11):1403-1407. doi:10.1038/s41564-020-0770-5

O'Toole Á, Scher E, Underwood A, et al. Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool. Virus Evol. 2021;7(2):veab064. Published 2021 Jul 30. doi:10.1093/ve/veab064