Using Genomics to Predict the FimH Type of E. coli

*Genome sequence in FASTA format:

Load Example

Drop files here or click to upload

Please note that uploaded files must inFASTA format, and file suffixes only accept.fna, .fa, .fasta.

Upload DNA sequence file(s) in FASTA format to start the analysis

*alignment_tool:

*Identity threshold:

*The minimum length of the overlap:

Application Information

More Info

Using FimTyper to identify the FimH type in fully or partially sequenced isolates of Escherichia coli

Running time: <3min
Sample input: E.coli_fim.fna
Example output: SAMPLE result

Reference

如果您在研究中使用了本工具，请在文章中引用下列文章:

TracePatho. 2025. TracePatho: All-in-one microbial analysis platform. Accessed July 9, 2025. https://tracepatho.com/.

Roer L, Tchesnokova V, Allesøe R, et al. Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles. J Clin Microbiol. 2017;55(8):2538-2543. doi:10.1128/JCM.00737-17