Type VI Secretion System Prediction

*Genome information in GenBank format:

Upload a file in GenBank format and run the prediction

*Select similarity search tool:

*E-value threshold for similarity search:

E-value threshold for similarity search

*Maximum interval (bp) between two co-localized T6SS components:

(0~100000) bp

*Minimum number of T6SS component proteins for each T6SS region:

*Minimum number of T6SS component protein types or domains for each T6SS region:

*BLAST Ha-value threshold for T6SS-related protein prediction:

*Percent identity for BLASTp search against T6SS component proteins:

Application Information

More Info

Based on the web-based resource SecReT6, the T6SS gene cluster and various T6SS-related proteins, including T6SS regulators (T6SRs), T6SS accessory proteins (T6SAs), T6SS immunity proteins (T6SIs), as well as recipient susceptibility factors, were identified and predicted. Support only upload complete genome.

Running time: <3min
Sample input: t6ss_input.gbk
Example output: SAMPLE result

Reference

如果您在研究中使用了本工具，请在文章中引用下列文章:

TracePatho. 2025. TracePatho: All-in-one microbial analysis platform. Accessed July 9, 2025. https://tracepatho.com/.

Zhang J, Guan J, Wang M, et al. SecReT6 update: a comprehensive resource of bacterial Type VI Secretion Systems. Sci China Life Sci. 2023;66(3):626-634. doi:10.1007/s11427-022-2172-x