Convert between formats such as. fasta. gff, Genbank, fna,. faa, etc.
convert
Serotype prediction based on their surface antigens, such as O, H, and K antigens.
如果您在研究中使用了本工具,请在文章中 引用下列文章:
TracePatho. 2025. TracePatho: All-in-one microbial analysis platform. Accessed July 9, 2025. https://tracepatho.com/.
Robertson J, Yoshida C, Kruczkiewicz P, et al. Comprehensive assessment of the quality of Salmonella whole genome sequence data available in public sequence databases using the Salmonella in silico Typing Resource (SISTR). Microb Genom. 2018;4(2):e000151. doi:10.1099/mgen.0.000151
Yoshida CE, Kruczkiewicz P, Laing CR, et al. The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies. PLoS One. 2016;11(1):e0147101. Published 2016 Jan 22. doi:10.1371/journal.pone.0147101
Zhang S, den Bakker HC, Li S, et al. SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data. Appl Environ Microbiol. 2019;85(23):e01746-19. Published 2019 Nov 14. doi:10.1128/AEM.01746-19
Zhang S, Yin Y, Jones MB, et al. Salmonella serotype determination utilizing high-throughput genome sequencing data. J Clin Microbiol. 2015;53(5):1685-1692. doi:10.1128/JCM.00323-15
Guibourdenche M, Roggentin P, Mikoleit M, et al. Supplement 2003-2007 (No. 47) to the White-Kauffmann-Le Minor scheme. Res Microbiol. 2010;161(1):26-29. doi:10.1016/j.resmic.2009.10.002
McQuiston JR, Waters RJ, Dinsmore BA, Mikoleit ML, Fields PI. Molecular determination of H antigens of Salmonella by use of a microsphere-based liquid array. J Clin Microbiol. 2011;49(2):565-573. doi:10.1128/JCM.01323-10
Fitzgerald C, Collins M, van Duyne S, Mikoleit M, Brown T, Fields P. Multiplex, bead-based suspension array for molecular determination of common Salmonella serogroups. J Clin Microbiol. 2007;45(10):3323-3334. doi:10.1128/JCM.00025-07