Escherichia genus strain phylotyping

*Genome sequence in FASTA format:

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Please note that uploaded files must inFASTA format, and file suffixes only accept.fna, .fa, .fasta.

Upload DNA sequence file(s) in FASTA format to start the analysis

*Method:

Application Information

More Info

Using ClermonTyping for Rapid Systematic Phylotyping of Escherichia Genus Strains

Running time: <3min
Sample input: EscherichiaColi.fa
Example output: SAMPLE result

Reference

如果您在研究中使用了本工具，请在文章中引用下列文章:

TracePatho. 2025. TracePatho: All-in-one microbial analysis platform. Accessed July 9, 2025. https://tracepatho.com/.

Beghain J, Bridier-Nahmias A, Le Nagard H, Denamur E, Clermont O. ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping. Microb Genom. 2018;4(7):e000192. doi:10.1099/mgen.0.000192

Clermont O, Dixit OVA, Vangchhia B, et al. Characterization and rapid identification of phylogroup G in Escherichia coli, a lineage with high virulence and antibiotic resistance potential. Environ Microbiol. 2019;21(8):3107-3117. doi:10.1111/1462-2920.14713