Salmonella Pathogenicity Island (SPI) finder

*Genome sequence in FASTA format:

Load Example

Drop files here or click to upload

Please note that uploaded files must inFASTA format, and file suffixes only accept.fna, .fa, .fasta.

Upload DNA sequence file(s) in FASTA format to start the analysis

*alignment_tool:

*identity threshold:

*cover threshold:

Application Information

More Info

A tool for identifying and locating Pathogenicity Islands in Salmonella

Running time: <3min
Sample input: Salmonella.fa
Example output: SAMPLE result

Reference

如果您在研究中使用了本工具，请在文章中引用下列文章:

TracePatho. 2025. TracePatho: All-in-one microbial analysis platform. Accessed July 9, 2025. https://tracepatho.com/.

Roer L, Hendriksen RS, Leekitcharoenphon P, et al. Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?. mSystems. 2016;1(3):e00009-16. Published 2016 Jun 21. doi:10.1128/mSystems.00009-16

Li Lingzhi, Gu Dan, Jiao Xin'an, Pan Zhiming. Role of pathogenicity islands in Salmonella during persistent infection. Microbiology China. 2022, 49(10): 4327-4336. doi:10.13344/j.microbiol.china.220410